SMD - Stanford Microarray Database | Tool name | SMD - Stanford Microarray Database |
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| URL | http://smd.stanford.edu |
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| Important features | A database that stores raw and normalized data from microarray experiments, and provides web interfaces for researchers to retrieve, analyze and visualize their data. |
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| Citations | Sherlock G, Hernandez-Boussard T, Kasarskis A, Binkley G, Matese JC, Dwight SS, Kaloper M, Weng S, Jin H, Ball CA, Eisen MB, Spellman PT, Brown PO, Botstein D, Cherry JM. The Stanford Microarray Database. Nucleic Acids Res. 2001 Jan 1;29(1):152-5. PubMed PMID: 11125075; PubMed Central PMCID: PMC29818. |
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| Year of publication | 2001 |
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| Rank by usage frequency | 100 |
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| Comments | Note as per the resource: "Access to non-public data is limited to registered Stanford researchers and their collaborators". |
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| Function | Microarray, Human, Mouse, Rat, Plant, Other species, Multiple species, Raw data repository |
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| Category | Online, Free |
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| Working status | Functional |
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| Other features | |
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| Other citations | 1. Gollub J, Ball CA, Binkley G, Demeter J, Finkelstein DB, Hebert JM, Hernandez-Boussard T, Jin H, Kaloper M, Matese JC, Schroeder M, Brown PO, Botstein D, Sherlock G. The Stanford Microarray Database: data access and quality assessment tools. Nucleic Acids Res. 2003 Jan 1;31(1):94-6. PubMed PMID: 12519956; PubMed Central PMCID: PMC165525. 2. Ball CA, Awad IA, Demeter J, Gollub J, Hebert JM, Hernandez-Boussard T, Jin H, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G. The Stanford Microarray Database accommodates additional microarray platforms and data formats. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D580-2. PubMed PMID: 15608265; PubMed Central PMCID: PMC539960. 3. Demeter J, Beauheim C, Gollub J, Hernandez-Boussard T, Jin H, Maier D, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G, Ball CA. The Stanford Microarray Database: implementation of new analysis tools and open source release of software. Nucleic Acids Res. 2007 Jan;35(Database issue):D766-70. Epub 2006 Dec 20. PubMed PMID: 17182626; PubMed Central PMCID: PMC1781111. 4. Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, Reddy TB, Wymore F, Zachariah ZK, Sherlock G, Ball CA. Implementation of GenePattern within the Stanford Microarray Database. Nucleic Acids Res. 2009 Jan;37(Database issue):D898-901. Epub 2008 Oct 25. PubMed PMID: 18953035; PubMed Central PMCID: PMC2686537. |
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